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2024 Liu,
F, Z Yang, C Wang, Z You, R Martin, W Qiao, J Huang, P Jacob, JL Dangl, J
Carette, S Luan, E Nogales and BJ Staskawicz (2024) Activation of the helper NRC4
immune receptor results in the formation of a hexameric resistosome. Cell doi: 10.1016/j.cell.2024.07.013. Published online July 30, 2024. PMID: 39094568. PDF Kozaeva,
E, AA Eida, EF Gunady, JL Dangl*, JM Conway* and JAN Brophy* (2024) Roots of
synthetic ecology: microbes that foster plant resilience in the changing
climate. Curr. Opinion Biotech. 8, 103172 (*co-corresponding
authors) doi: https://doi.org/10.1016/j.copbio.2024.103172.
PMID: 39029405. PDF Conway,
JM, PJ Martinez, ED Wilson, NM Del Risco and JL Dangl (2024) Arabidopsis root
microbiome microfluidic (ARMM) device for imaging bacterial colonization and
Morphogenesis of Arabidopsis roots. Tissue Morphogenesis: Methods and
Protocols, Methods in Molecular Biology, 2805, 213-228. doi: https://doi.org/10.1007/978-1-0716-3854-5_15.
PDF Jones*,
JDG, BJ Staskawicz* and JL Dangl* (2024) The plant immune system: From
discovery to deployment. Cell 187, 2095-2116. (*co-equal
authors) doi: https://doi.org/10.1016/j.cell.2024.03.045
PMID: 38670067. PDF Yang,
Y, OJ Furzer, EP Fensterle, S Lin, Z Zheng, NH Kim,
Li Wan, and JL Dangl (2024) Paired plant immune CHS3/CSA1 receptor alleles
form distinct hetero-oligomeric complexes. Science 383, eadk3468.
doi: https://www.science.org/doi/10.1126/science.adk3468
PMID: 38359131. PDF 2023 Russ,
D, CR Fitzpatrick, PJPL Teixeira and JL Dangl (2023) Deep discovery informs difficult deployment in plant
microbiome science. Cell 186, 4496-4513 doi: https://doi.org/10.1016/j.cell.2023.08.035.
PMID: 37832524. PDF
Jacob,
P, J Hige and JL Dangl (2023) Is Localized Acquired Resistance the mechanism
for effector-triggered disease resistance in plants? Nature Plants doi: 10.1038/s41477-023-01466-1.
Published online August 3, 2023 PMID: 37537398.
PDF Wang,
Z, X Liu, J Yu, S Yin, W Cai, NH Kim, F El Kasmi, JL Dangl and L Wan (2023)
Plasma membrane association and resistosome formation of plant helper immune
receptors. Proc. Natl. Acad. Sci., USA 120, e2222036120. doi: 10.1073/pnas.2222036120. PMID: 37523563 PDF Jacob, P, J Hige, L Song, A Bayless, D Russ, V
Bonardi, F El-Kasmi, L Wunsch, Y Yang, CR Fitzpatrick, BJ McKinney, MT
Nishimura, MR Grant and JL Dangl (2023) Broader functions
of TIR domains in Arabidopsis immunity. Proc. Natl. Acad. Sci., USA 120, e2220921120.
doi: 10.1073/pnas.2220921120. Published online 9 March, 2023. PMID: 36893276. PDF 2022 Salvato,
F, S Vintila, OM Finkel, JL Dangl and M
Kleiner (2022) Evaluation
of protein extraction methods for metaproteomic analyses of root-associated
microbes. Molec. Plant Microbe Interact. 35, 977-988. doi:
10.1094/MPMI-05-22-0116-TA. PMID: 35876747. Conway, JM, WG Walton, I
Salas-González, TF Law, CA Lindberg, LE Crook, SM Kosina, CR Fitzpatrick, AD
Lietzan, TR Northen, CD Jones, OM Finkel, MR Redinbo* and JL Dangl* (2022)
Structure, function and microbial ecology of diverse MarR bacterial regulators
of auxin catabolism. (*co-correspondng
authors). Nature Microbiol.. doi: 10.1038/s41564-022-01244-3. Published online 20 October, 2022. PMID:
36266335. PDF Yang,
Y., NH Kim, V Cevik, P Jacob, L Wan, OJ Furzer and JL Dangl (2022) Allelic
variation in the Arabidopsis TNL CHS3/CSA1 immune receptor pair
reveals two functional regulatory modes. Cell Host & Microbe 30,
1701-1716. https://doi.org/10.1016/j.chom.2022.09.013
Published online 17 October, 2022. PMID: 36257318 PDF
See
also this
comment on the above paper. Essuman,
K, J Milbrandt, JL Dangl and MT Nishimura (2022) Shared TIR enzymatic
functions regulate cell death and immunity across the Tree of Life. Science.
377, eabo0001. doi:: 10.1126/science.abo0001. Published early online 7 July,
2022. PMID: 35857622. PDF Qi, M, JC Berry, K
Veley, L O’Connor, OM Finkel, I Salas-González, M Kuhs, J Jupe, E Holcomb, T
Del Rio, C Creech, P Liu, SG Tringe, JL Dangl, DP Schachtman, RS. Bart (2022)
Identification of beneficial and
detrimental bacteria impacting sorghum responses to drought using multi-scale
and multi-system microbiome comparisons. ISME J. doi: 10.1038/s41396-022-01245-4.
Published online 6 May, 2022. PMID: 35523959. PDF Kim,
NH, P Jacob and JL Dangl (2022) Tansley Insight: Con-Ca2+-tenating
plant immune responses via calcium-permeable cation channels. New Phytol.
doi.org/10.1111/nph.18044. Published
online 21 February, 2022. PMID: 35181918 PDF
2021 Saile, SC, FM Ackerman, S
Sunil, J Keicher, A Bayless, V Bonardi, L Wan, M Doumane, E Stöbbe, Y
Jaillais, M-C Caillaud, JL Dangl, MT Nishimura, C Oecking and F
El Kasmi (2021) Arabidopsis ADR1 helper NLR immune receptors
localize and function at the plasma membrane in a phospholipid dependent manner. New Phytol. doi: 10.1111/nph.17788. Published online 10 October, 2021. PMID: 34628646. PDF
Tzipilevich, E, D
Russ, JL Dangl and PN Benfey (2021) Plant immune system activation is
necessary for efficient interaction with auxin secreting beneficial bacteria. Cell Host &
Microbe Published online 4 October, 2021. doi: 10.1016/j.chom.2021.09.005. PMID: 34610294. PDF Pruitt, RN, F Locci,, F Wanke, L Zhang, SC Saile, A Joe, C Hua, D
Karelina, K Fröhlich, W-L Wan, M Hu, S Rao, S Stolze, A Harzen, AA Gust, K
Harter, MHAJ Joosten, BPHJ Thomma, J-M Zhou, JL Dangl, D Weigel, H Nakagami,
C Oecking, F El Kasmi,, JE Parker and T Nürnberger (2021) The EDS1-PAD4-ADR1 node mediates Arabidopsis
pattern-triggered immunity. Nature doi: 10.1038/s41586-021-03829-0. Published
early online September 8, 2021 PMID: 34497423. PDF Jacob, P, NH Kim, F
Wu, F El-Kasmi, Y Chi, WG Walton, OJ Furzer, AD Lietzan, S Sunil, K
Kempthorn, MR Redinbo, Z-M Pei*, L Wan* and JL Dangl*
(2021) Plant “helper” immune receptors are Ca2+-permeable
non-selective cation channels. Science 373, 420–425 (*co-correspondng
authors). doi: 10.1126/science.abg7917. Published
early online June 17, 2021 https://science.sciencemag.org/content/early/2021/06/16/science.abg7917. PMID: 34140391. PDF
See also these news stories on
the paper above. https://www.hhmi.org/news/plant-immune-proteins-trigger-cell-death https://mp.weixin.qq.com/s/6rCbZofFFUL3SFfMiXETlQ Teixeira PJPL, NR Colaianni, TF. Law,
JM. Conway, S Gilbert, H Li, I Salas-González, D Panda, NM. Del Risco, OM
Finkel, G Castrillo, P Mieczkowski, CD Jones, JL Dangl (2021) Specific
modulation of the root immune system by a community of commensal bacteria. Proc. Natl.
Acad. Sci., USA doi: 10.1073/pnas.2100678118 PMID: 33879573. Published online 16 April, 2021. PDF Parys
K, NR Colaianni, H-S Lee, U Hohmann, N Edelbacher, A Trgovcevic, Z
Blahovska, D Lee, A Mechtler, Z
Muhari-Portik, M Madalinski, N Schandry, I Rodríguez-Arévalo, C Becker,
E Sonnleitner, A Korte, U Bläsi, N Geldner, M Hothorn, CD Jones*, JL Dangl*
and Y Belkhadir* (2021) Signatures of
antagonistic pleiotropy in a bacterial flagellin epitope. Cell Host & Microbe 29,
620-634 (*co-correspondng
authors). doi: 10.1016/j.chom.2021.02.008 PMID: 33713601.
Published online 12 March, 2021. PDF Colaianni, NR, K Parys, H-S Lee, JM Conway, NH Kim, N
Edelbacher, TS Mucyn, M Madalinski, TF. Law, CD Jones*, Y Belkhadir* and JL
Dangl* (2021) A complex immune response to flagellin epitope variation in
commensal communities. Cell Host & Microbe 29,
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Published online 12 March, 2021. PDF See
also this
comment on the two papers above. Salas-González, I, G Reyt, P
Flis, V Custódio, D Gopaulchan, N Bakhoum, K Suresh, R Benni Franke, JL.
Dangl, DE. Salt and G Castrillo (2021) Coordination between the microbiota
and the root endodermis is required for plant mineral nutrient homeostasis. Science 371, eabd0695. doi:
10.1126/science.abd0695. PR PMID: 33214288.
Published online 19 Nov. 2020. PDF See
also this
comment on the above paper. 2020 Finkel,
OM, I Salas-González, G Castrillo, JM Conway, TF Law, PJPL Teixeira, ED Wilson, CR
Fitzpatrick, CD Jones and JL Dangl (2020) A single bacterial genus maintains root growth in a complex microbiome.
Nature advanced publication Sept. 30, 2020. doi: https://doi.org/10.1038/s41586-020-2778-7
PMID: 32999461. PDF
Saile, SC, P Jacob, B Castel, LM Jubic,
I Salas-González, M Bäcker, JDG Jones*, JL Dangl*, F El Kasmi* (2020) Two unequally redundant
"helper" immune receptor families mediate Arabidopsis thaliana
intracellular "sensor" immune receptor functions. PLoS Biology 18, e3000783 (*co-correspondng
authors). doi: https://doi.org/10.1371/journal.pbio.3000783.
PMID: 32925907. PDF Wang,
B, Z Zhao, L Jabusch, D Chiniquy, K Ono, J Conway, Z Zhang, G Wang, D
Robinson, J-F Cheng, JL Dangl, T Northen and Y Yoshikuni (2020) Modular assembly of a resource for studying
plant-microbe interactions using CRAGE-Duet. ACS Synthetic Biology in
press. doi:
10.1021/acssynbio.0c00280. PMID: 32786359. PDF
Ramirez-Villacis,
D, OM Finkel, I Salas-Gonzalez, CR Fitzpatrick, JL Dangl, CD Jones and A
Leon-Reyes (2020) Root microbiome modulates plant growth promotion induced by
low doses of Glyphosate. mSphere 5, e00484-20. doi: 10.1128/mSphere.00484-20.
PIMD: 32817451
PDF Fitzpatrick,
CR, I Salas-González, JM Conway, OM Finkel, S Gilbert, D Russ, PJPL Teixeira and JL
Dangl (2020) The
plant microbiome: from ecology to reductionism and beyond. Annu. Rev. Microbiol. 74, 81-100.
doi: 10.1146/annurev-micro-022620-014327. PMID: 32530732. PDF 2019 Finkel, OM, I Salas-Gonzalez, G Castrillo, S Saepen, TF Law, CD
Jones and JL Dangl (2019) The effects
of soil phosphorous content on microbiota are driven by the plant phosphate
starvation response. PLoS Biology 17,
e3000534. doi:
10.1371/journal.pbio.3000534. PMID: 31721759. PDF Supporting
information at:
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PJPL, NR Colaianni, CR Fitzpatrick and JL Dangl (2019) Beyond pathogens: microbiota interactions with the
plant immune system. Curr. Opin.
Microbiol. 49; 7-17. doi: 10.1016/j.mib.2019.08.003. PMID:
31563068. PDF Prokchorchik, M, S Choi, E-H Chung, K
Won, JL Dangl and KH Sohn (2019) A host target of a bacterial cysteine
protease virulence effector plays a key role in convergent evolution of plant
innate immune system receptors. New
Phytol. doi: 10.1111/nph.16218.
PMID: 31550400. PDF Redditt, TJ, E-H Chung, H
Zand Karimi, N Rodibaugh, Y Zhang, JC Trinidad, JH Kim, Q Zhou, M Shen, JL
Dangl, DM Mackey and RW Innes (2019) AvrRpm1 functions as an ADP-ribosyl
transferase to modify NOI-domain containing proteins, including Arabidopsis
and soybean RPM1-interacting protein 4. Plant Cell
31, 2664-2681. doi:
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comment on the above paper. Wan, L, K Essuman, RG Anderson, Y Sasaki, F
Monteiro, E-H Chung, E Osborne-Nishimura, A DiAntonio, J Milbrandt*, JL
Dangl* and MT Nishimura* (2019) TIR domains of plant immune receptors are NAD+
cleaving enzymes that promote cell death. Science
365, 799-803. doi: 10.1126/science.aax1771. (*co-correspondng
authors) PMID: 31439793. PDF See
also news
coverage of the above paper. Van de Weyer, A-L, F Monteiro, OJ Furzer, MT Nishimura, V Cevik,
K Witek, JDG Jones*, JL Dangl*, D Weigel* and F Bemm (2019) A species-wide
inventory of NLR genes and alleles in Arabidopsis
thaliana. Cell 178,
1260-1272. doi: https://doi.org/10.1016/j.cell.2019.07.038.
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also news
coverage of the above paper. Jubic, LM, S Saile, OJ Furzer, F El Kasmi and JL
Dangl (2019) Help Wanted: Helper NLRs and Plant Immune Responses. Curr. Opinion Plant Biol. 50,
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Lewald, K Zhalnina, S Kosina, BP Bowen, D Treen, J Vogel, A Visel, M Watt, JL
Dangl and TR Northen (2019) Multi-lab EcoFAB study shows highly reproducible
physiology and depletion of soil metabolites by a model grass. New Phytol. doi: 10.1111/nph.15662.
PMID: 30585637. PDF 2018 Levy, A, JM Conway, JL Dangl and T Woyke (2018) Elucidating bacterial gene functions in the plant
microbiome. Cell Host & Microbe
24, 475-485. doi: 10.1016/j.chom.2018.09.005. Review. PMID: 30308154. PDF O’Neill, EM, TS Mucyn, JB Patteson, OM Finkel, E-H
Chung, JA Baccile, E Massolo, FC Schroeder, JL Dangl and B Li (2018) A new
bacterial small molecule suppresses plant immune response. Proc. Natl. Acad. Sci., USA doi: 10.1073/pnas.1803779115. Published online
September 20, 2018. PMID 30237288. PDF + SI Walters, WA, Z Jin, N
Youngblut, J Sutter, W Zhang, A Gonzalez, J Peiffer, O Koren, Q Shi, R
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Dangl, and RE Ley (2018) The maize rhizosphere microbiome responds to plant
age and genotype. Proc. Natl. Acad. Sci., USA. doi: 10.1073/pnas.1800918115. Published online
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Paredes, S, T Gao, TF Law, OM Finkel, T Mucyn, PJPL Teixeira, I
Salas González, ME Feltcher, MJ Powers, EA Shank, CD Jones, V Jojic, JL Dangl†
and G Castrillo† (2018) Design
of synthetic bacterial communities for predictable plant phenotypes. PLoS Biology 16, e2003962. doi:
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M, C Krause, M Karnahl, I Reichardt, F El Kasmi, U Mayer, Y-D Stierhof, U
Hiller, G Strompen, M Bayer, M Kientz, MH Sato, MT Nishimura, JL Dangl, AA
Sanderfoot and G Jürgens (2018) Concerted
action of ancient and novel SNARE complexes in flowering-plant cytokinesis. Dev. Cell 44, doi: 10.1016/j.devcel.2017.12.027. Published
online January 27, 2018. PMID 29396117. PDF
Levy,
A, I Salas González, M. Mittelviefhaus, S Clingenpeel, S Herrera Paredes, J
Miao, K Wang, G Devescovi, K Stillman, F Monteiro, BR Alvarez, DS Lundberg,
T-Y Lu, S Lebeis, Z Jin, M McDonald, AP Klein, ME Feltcher, T Glavina del
Rio, SR Grant, SL Doty, RE Ley, DA Pelletier, J Vorholt, SG Tringe†,
T Woyke† and JL Dangl† (2018) Genomic determinants of bacterial adaptation to plants. Nature Genetics 50, 138-150.
doi: 10.1038/s41588-017-0012-9. Published online December 18, 2017. (†
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coverage of the above and a Nature
Genetics News and
Views. 2017 Cole,
B, ME Feltcher, RJ Waters, KM Whetmore, TS Mucyn, EM Ryan, N Wang, S
Ul-Hasan, M McDonald, Y Yoshikuni, RR Malmstrom, AM Deutschbauer, JL Dangl†
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28938018. PDF See
also news
coverage of the above. El
Kasmi, E-H Chung, RG Anderson, Jinyue Li, L Wan, TK Eitas, Z Gao and JL Dangl
(2017) Signaling from the plasma-membrane localized plant immune receptor
RPM1 requires self-association of the full-length protein. Proc. Natl.
Acad. Sci., USA doi: 10.1073/pnas.1708288114. PMID
28808003. PDF Yang,
Q, Y He, M Kabahuma, T Chaya, A Kelly, E Borrego, Y Bian, F El Kasmi, L Yang,
P Teixeira, J Kolkman, R Nelson, M Kolomiets, JL Dangl, R Wisser, J Caplan, X
Li, N Lauter and P Balint-Kurti (2017) A maize caffeoyl-CoA
O-methyltransferase gene confers quantitative resistance to multiple
pathogens. Nature Genet. doi: 10.1038/ng.3919. Published online July
24, 2017. PDF Finkel, OM, G Castrillo, S Herrera Paredes, I
Salas Gonzalez and JL Dangl (2017) Understanding and exploiting plant beneficial microbes. Curr. Opinion Plant Biol.38, 155-163. doi:
10.1016/j.pbi.2017.04.018. PMID 28622659. PDF Biswas,
S, K Kerner, PJPL Teixeira, JL Dangl, V Jojic and PA Wigge
(2017) Tradict enables high fidelity reconstruction of the eukaryotic
transcriptome from 100 marker genes. Nature
Comm. 8, 15309. doi:
10.1038/ncomms15309. Published online May 5, 2017. PR PMID 28474674. PDF Tran,
DTN, E-H Chung, A Habring-Müller, M Demar, R Schwab, JL. Dangl, D Weigel, and
E Chae (2017) Activation of a plant
NLR complex through heteromeric association with an auto-immune risk variant
of another NLR. Current Biol. doi: 10.1016/j.cub.2017.03.018. Published
online April 24, 2017. PR PMID 28416116 PDF See
also a very nice Commentary on the paper above. Busby,
PE, C Soman, MR Wagner, ML Friesen, J Kremer, A Bennett, M Morsy, JA Eisen,
JE Leach and JL Dangl (2017) Research priorities for harnessing plant
microbiomes in sustainable agriculture. PLoS
Biol 15, e2001793. doi:
10.1371/journal.pbio.2001793. (Perspective). PMID 28297714. PDF Castrillo,
G, PJPL Teixeira, S Herrera-Paredes, TF Law, L de Lorenzo, ME Feltcher, OM
Finkel, N Breakfield, P Mieczkowski, CD Jones, J Paz-Ares, and JL Dangl
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immunity. Nature 543, 513–518. doi: 10.1038/nature21417.
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PMID 28297714. PDF See
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coverage of the above. And read a very nice Perspective
on this paper. Garcia-Molina, A, M Altmann, A
Alkofer, P Epple, JL Dangl and P Braun (2017) LSU network hubs integrate
abiotic and biotic stress responses via interaction with the superoxide
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PDF Yang,
L, PJPL Teixeira, S Biswas, OM Finkel, Y He, ME English, P Epple, P Mieczkowski and JL Dangl (2017) Pseudomonas
syringae type III effector HopBB1 promotes host transcriptional repressor
degradation to regulate phytohormone responses and virulence. Cell Host
& Microbe .doi: 10.1016/j.chom.2017.01.003. Published online February
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Asqui, S, D Vercammen, I Serrano, M Valls, S Rivas, F van Breusegem, FL
Conlon, JL Dangl and NS Coll (2017) AtSERPIN1 is an inhibitor of the
metacaspase AtMC1-mediated cell death and autocatalytic processing in planta.
New Phytol. doi: 10.1111/nph.14446,
published online February 3, 2017. PR PMID
28157265. PDF Nishimura,
MT, RG Anderson, KA Cherkis, TF Law, Q Liu, M Machius, Z Nimchuk, L Yang, E-H
Chung, F El-Kasmi, M Hyunh, EO Nishimura, J Sondek and JL Dangl (2017) The
TIR-only protein RBA1 recognizes a pathogen effector to regulate cell death
in Arabidopsis. Proc. Natl.
Acad. Sci., USA. doi: 10.1073/pnas.1620973114 published online January
30, 2017 PR PMID 28137883. PDF See
also the Perspectives
on the paper above. 2016 JDG Jones*, RE Vance* and JL
Dangl* (2016) Intracellular innate immune surveillance devices in plants and
animals. Science 354, aaf6395.
doi: 10.1126/science.aaf6395. (*equal contribution).
PDF Peterson,
BA, DC Haak, MT Nishimura, PJPL Teixeira, SR James, JL Dangl and ZL Nimchuk
(2016) Genome-wide assessment of Cas9 targeting and specificity in
higher-order CRISPR multiplexed plants. PLoS
ONE doi:10.1371/journal.pone.0162169
Published online September 13, 2016. PDF Iakovidis,
M, PJPL Texeira, M Exposito-Alonso, MG Cowper, TF Law, Q Liu, MC Vu, TM Dang,
JA Corwin, D Weigel, JL Dangl, and SR Grant (2016) Genetic architecture of Arabidopsis thaliana pleiotropic
responses to the type-III effector HopAM1 from Pseudomonas syringae. Genetics,
doi:
10.1534/genetics.116.190678. PDF Wagner, MR, DS Lundberg, T Glavina del Rio, SG
Tringe, JL Dangl and T Mitchell-Olds (2016) Age, genotype, and environment
shape the root and leaf microbiomes of a wild perennial plant. Nature
Comm. doi:10.1038/NCOMMS12151. PDF With
news coverage at:
http://seedworld.com/disentangling-plant-microbiome/ Washington,
EJ, MS Mukhtar, OM Finkel, L Wan, MJ Banfield, JJ Kieber and JL Dangl (2016)
The P. syringae type III effector
HopAF1 suppresses plant immunity by targeting methionine recycling to block
ethylene induction. Proc. Natl. Acad. Sci., USA. doi: 10.1073/pnas.1606322113. published
online June 6, 2016. PDF Blaser
MJ, ZG Cardon, MK Cho, JL Dangl, TJ Donohue, JL Green, R Knight, ME Maxon, TR
Northen TR, KS Pollard, EL Brodie (2016) Towards a predictive understanding
of Earth’s microbiomes to address 21st century challenges MBio. 13; pii: e00714-16. doi: 10.1128/mBio.00714-16. PMID 27178263.
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CJ, D Husmann, W Liu, F El Kasmi, H Wang, A Papikian, WA Pastor, G Moissiard,
AA Vashisht, JL Dangl, JA Wohlschlegel and SE Jacobsen (2016)
Arabidopsis AtMORC4 and AtMORC7 form nuclear bodies and repress a large
number of protein-coding genes. PLoS
Genet. 12, e1005998. doi:
10.1371/journal.pgen.1005998 published online May 12, 2016. PR PMID 27171361. PDF Dong,
OX, V Woloshen, M Tong, V Bonardi, JL Dangl and Xin Li (2016) Loss of ADR1-L1 leads to enhanced autoimmunity
through transcriptional over-compensation by its redundant paralogs ADR1 and ADR1-L2. New Phytologist 210,
960-73. doi: 10.1111/nph.13821 published online January 4, 2016. PDF Jin, Z, SC Di Rienzi,
A Janzon, JJ Werner, LT Angenent, JL Dangl, DM Fowler and RE Ley (2016) Novel
rhizosphere soil alleles for the enzyme 1-Aminocyclopropane-1-Carboxylate
Deaminase queried for function with an in vivo competition assay. Appl. Envirol. Micriobiol. 82, 1050-1059. doi:
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2015 Alivisatos
AP, MJ Blaser, EL Brodie, M Chun, JL Dangl,
TJ Donohue, PC Dorrestein, JA Gilbert, JL Green, JK Jansson, R Knight, ME
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DS Lundberg, J Han, JL Dangl, N Ivanova, T Woyke, N Kyrpides and A Pati
(2015) ProDeGe: a computational protocol for fully-automated decontamination
of genomes. ISME
J. doi:10.1038/ismej.2015.100 (published online June 9, 2015). PDF Lebeis, SL, S
Herrera-Paredes, DS Lundberg, N Breakfield, J Gehring, M McDonald, S
Malfatti, T Glavina del Rio, CD Jones, SG Tringe, and JL Dangl (2015)
Salicylic acid modulates colonization of the root microbiome by specific
bacterial taxa. Science 349, 860-864 doi:
10.1126/science.aaa8764 PDF Other supporting material at: https://www.sciencemag.org/content/early/2015/08/11/science.aaa8764/suppl/DC1 See
also the Perspectives
on this paper above. And
news coverage at: http://www.the-scientist.com/?articles.view/articleNo/43530/title/Underground-Immunity/ https://www.sciencenews.org/article/defense-hormones-guide-plant-roots%E2%80%99-mix-microbes http://www.hhmi.org/news/plant-defense-hormones-help-sculpt-root-microbiome And
more news here. Tremblay, J, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F
Chen, JL Dangl, SG Tringe (2015) Primer and platform effects on 16S rRNA tag
sequencing, Frontiers in
Microbiology 6, 771. doi:
10.3389/fmicb.2015.00771 PMID 26300854 (published online August 5, 2015). PDF
Nishimura, M, F Monteiro and JL Dangl (2015) Treasure
your exceptions: unusual domains in immune receptors reveal host virulence
targets. Cell (Preview) 161, 957-960. http://dx.doi.org/10.1016/j.cell.2015.05.017
PDF Hacquard, S, R Garrido-Oter, A
González, S Spaepen, G Ackermann, S Lebeis, AC McHardy*, JL Dangl*, R
Knight*, RE Ley* and P Schulze-Lefert* (2015) Microbiota and host nutrition
and animal kingdoms (Review). Cell Host &
Microbe 17, 603-616 doi: 10.1016/j.chom.2015.04.009 (*co-corresponding
authors) PDF Biswas, S, M
McDonald, DS Lundberg, JL Dangl and V Jojic, (2015) Learning Microbial
Interaction Networks from Metagenomic Count Data. Research in Computational
Molecular Biology (RECOMB) Lecture Notes in Computer Science, pp.
32-43. PDF G-F
Wang, J Jiabing, F EI-Kasmi, JL Dangl, G Johal. PJ
Balint-Kurti (2015) Molecular and functional analyses of a maize autoactive
NB-LRR protein identify precise structural requirements for activity. PLoS Pathogens. 11,
e1004674. doi:10.1371/journal.ppat.1004674. PDF
Supporting information at: http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1004674#sec030 Munch, D, O-K Teh, FG Malinovsky, Q Liu, RR
Vekuturi, F El Kasmi, P Broderson, I Hara-Nishimura, JL Dangl, M Petersen, J
Mundy and D Hofius (2015) Retromer contributes to immunity associated cell
death in Arabidopsis. Plant Cell doi:10.1105/tpc.114.132043. published
online February 13, 2015. PDF Zhao, T, J Li, L Rui, MT Nishimura, JP Vogel, N
Liu, S Liu, Y Zhao, JL Dangl and D Tang (2015) A truncated NLR protein,
TIR-NBS2, is required for activated defense responses in the exo70B1
mutant. PLoS Genetics 11,
e1004945. doi:10.1371/journal.pgen.1004945. Supporting information at: http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004945#sec005 2014 Chung, E-H, F El-Kasmi, Y He, A Loehr and JL Dangl (2014) A plant
phosphoswitch platform repeatedly targeted by type III effector proteins
regulates the output of both tiers of plant immune receptors. Cell Host
& Microbe 16, 484-494.
doi: 10.1016/j.chom.2014.09.004 PDF Weßling, R, PM Epple, S Altmann, Y He, Li Yang, SR Henz, N McDonald, K Wiley, KC Bader, C Gläßer, MS Mukhtar,
S Haigis, L Ghamsari, AE Stephens, JR Ecker, M Vidal, JDG Jones, KFX Mayer, E
Ver Loren van Themaat, D Weigel, P Schulze-Lefert, JL Dangl*, R
Panstruga* and P Braun* (2014) Convergent targeting of a common
host protein-network by pathogen effectors from three kingdoms of life. Cell
Host & Microbe 16, 364–375. doi: 10.1016/j.chom.2014.08.004 (*co-corresponding authors) PDF Yourstone, SM, DS Lundberg, JL Dangl and CD Jones (2014) MTToolbox:
Improved amplicon sequencing using molecule tags. BMC Bioinformatics 15, 284. doi:10.1186/1471-2105-15-284
PDF Belkhadir, Y, L Yang, J Hetzel, JL Dangl* and
J Chory* (2014) The growth-defense pivot: Crisis management in plants
mediated by LRR-RK surface receptors. Trends
Biochem Sci. 39, 447-4566.
doi: 10.1016/j.tibs.2014.06.006 (*co-corresponding
authors) PDF Coll, NS, A Smidler, M
Puigvert, C Popa, M Valls and JL Dangl (2014) The plant metacaspase
AtMC1 in pathogen-triggered programmed cell death and aging: Functional
linkage with autophagy. Cell Death & Differentiation online publication, 02 May 2014;
doi:10.1038/cdd.2014.50. PDF Wagner, MR, DS Lundberg, D Coleman-Derr, SG Tringe, JL Dangl and T
Mitchell-Olds (2014) Natural soil microbes alter flowering phenology and the
intensity of selection on flowering time in a wild Arabidopsis relative. Ecol.
Letters. 17, 717-726. doi:
10.1111/ele.12276. PDF Correction: PDF The
paper above was profiled at: Nishimura, MT and JL Dangl (2014) Paired plant
immune receptors. Science 344,
267-268. doi: 10.1126/science.1253849. PDF Bartoli, C, O Berge, CL Monteil, C Guilbaud, GM Balestra,
L Varvaro, CD Jones, JL Dangl, DA Baltrus, DC Sands and CE Morris (2014). The
Pseudomonas viridiflava phylogroups in the P. syringae species
complex are characterized by genetic variability and phenotypic
plasticity of pathogenicity-related traits. Environmental Microbiol.
doi: 10.1111/1462-2920.12433. PDF Baltrus, DA, S Yourstone, AL Lind, C Guilbaud, DC
Sands, CD Jones, CE Morris, JL Dangl (2014) Draft genomes for a
phylogenetically diverse suite of Pseudomonas syringae strains from
multiple source populations. Genome Announc. 2, e01195-13. doi:10.1128/genomeA.01195-13. PDF
Mucyn, TS, S Yourstone, AL Lind, S Biswas, MT
Nishimura, DA Baltrus, JS Cumbie, JH Chang, CD Jones, JL Dangl* and SR Grant*
(2014) Variable suites of non-effector genes are co-regulated in the type III
secretion virulence regulon across the Pseudomonas syringae
phylogeny. PLoS Pathogens 10,
e1003807. doi:10.1371/journal.ppat.1003807. PDF 2013 Dangl, JL and LL Lanier (2013) Founding father of
FACS: Professor Leonard A. Herzenberg (1931–2013). Proc. Natl. Acad. Sci.,
USA. 110, 20848–20849.
10.1073/pnas.1321731111. PDF Biswas S, DS Lundberg, JL Dangl and V Jojic (2013). A
Poisson-multivariate normal hierarchical model for measuring microbial
conditional independence networks from metagenomic count data. Machine
Learning in Computational Biology Workshop at the Annual Conference on Neural
Information Processing Systems. PDF Washington, EJ, MJ Banfield and JL Dangl (2013)
What a difference a Dalton makes: Bacterial virulence factors modulate
eukaryotic host cell signaling systems via deamidation. Microbiol. Mol. Biol. Rev. 77,
527-539. doi: 10.1128/MMBR.00013-13. PDF Lundberg, DS, S Yourstone, P Mieczkowski, CD Jones and JL Dangl
(2013) Practical innovations for high-throughput amplicon sequencing. Nature
Methods 10, 999–1002.
doi:10.1038/nmeth.2634. PDF Note: Updated
protocol June 21, 2014 See
also an accompanying
profile for the paper above. Dangl*, JL, DM Horvath and BJ Staskawicz (2013) Pivoting the plant
immune system from dissection to deployment. Science 341, 746-751. doi:
10.1126/science.1236011. (* corresponding author) PDF The
paper above was profiled at: https://www.nsf.gov/news/news_summ.jsp?cntn_id=128832&org=MCB&from=home Torres,
MA, J Morales, C Sánchez-Rodríguez, A Molina, JL Dangl (2013)
Functional interplay between Arabidopsis NADPH oxidases and
heterotrimeric G proteins. Molec. Plant-Microbe Interact. 26,
686-694. doi:
10.1094/MPMI-10-12-0236-R PDF Roberts, M, S Tang, A Stallmann, JL Dangl* and V
Bonardi (2013) Genetic requirements for signaling from an autoactive plant
NB-LRR intracellular innate immune receptor. PLoS Genetics 9, e1003465. doi:10.1371/journal.pgen.1003465 (* corresponding author). PDF
Peiffer, JA, A Spor, Z
Jin, O Koren, SG Tringe, JL Dangl, ES Buckler and RE Ley (2013). Diversity
and heritability of the maize rhizosphere microbiome under field conditions. Proc.
Natl. Acad. Sci., USA. doi:
10.1073/pnas. 1302837110 PDF Sarris
PF, EA Trantas, DA Baltrus, CT Bull, WP Wechter, S Yan, F Ververidis, NF
Almeida, CD Jones, JL Dangl, NJ Panopoulos, BA Vinatzer, DE Goumas (2013)
Comparative Genomics of Multiple Strains of Pseudomonas cannabina pv. alisalensis, a Potential
Model Pathogen of Both Monocots and Dicots. PLoS ONE 8, e59366.
doi:10.1371/journal.pone.0059366. PDF 2012 Bonardi, V and JL Dangl (2012) How complex
are intracellular immune receptor signaling complexes? Frontiers Plant Sci. 3, 1-9.
doi: 10.3389/fpls.2012.00237. PDF Lebeis, SL, M Rott, JL Dangl* and P
Schulze-Lefert* (2012) 28th New Phytologist Symposium: Culturing a plant
microbiome community at the cross-Rhodes (meeting report). New Phytologist 196, 341–344.
(*co-corresponding authors).
PDF He,
Y, E-H Chung, DA Hubert, P Tornero and JL Dangl (2012) Specific missense
alleles of the Arabidopsis Jasmonic Acid co-receptor COI1 regulate innate
immune receptor accumulation and function. PLoS Genetics 8, e1003018. doi:10.1371/journal.pgen.1003018.. PDF Cherkis, KA, BRS Temple, E-H Chung, J Sondek and
JL Dangl (2012) AvrRpm1 missense mutations weakly activate RPS2-mediated
immune response in Arabidopsis
thaliana. PLoS ONE 7, e42633.
doi:10.1371/journal.pone.0042633. PDF Lundberg, DS, SL Lebeis, S Herrera-Paredes, S
Yourstone, J Gehring, S. Malfatti, J Tremblay, A Engelbrekston, V Kunin, T
Glavina del Rio, R Edgar, T Eickhorst, RE Ley, P Hugenholtz, SG Tringe and JL
Dangl (2012) Defining the core Arabidopsis thaliana root
microbiome. Nature 488,
86-90. doi: 10.1038/nature11237. PDF The
paper above was featured in: Hirsch,
PR and TH Mauchline (2012) Who’s who in the plant root microbiome? Nat. Biotechnol. 30, 961-962. PDF
And
also received press coverage, at: http://www.hhmi.org/news/dangl20120801.html http://www.jgi.doe.gov/News/news_12_08_01.html http://www.sciencedaily.com/releases/2012/08/120801132440.htm http://www.sciencedaily.com/releases/2012/08/120801132428.htm http://www.sciencedaily.com/releases/2012/08/120803082917.htm Baltrus,
DA, MT Nishimura, KM Dougherty, S Biswas, MS Mukhtar, J Vicente, EB Holub
and JL Dangl (2012) The molecular basis of host specialization in bean
pathovars of Pseudomonas syringae. Molec. Plant-Microbe
Interact. 7, 877-888. dx.doi.org/10.1094/MPMI-08-11-0218. PDF Bonardi,
V, K Cherkis, MT Nishimura and JL
Dangl (2012) A new eye on NLR proteins: focused on clarity or diffused by
complexity? Curr. Opinion Immunol.
24, 41-50.
10.1016/j.coi.2011.12.006. PDF Argueso,
CT, FJ Ferreira, P Epple, JPC To, CE Hutchison, GE Schaller, JL Dangl and JJ
Kieber (2012) Two-component elements mediate interactions between cytokinin
and salicylic acid in plant immunity. PLoS
Genet 8, e1002448. doi:10.1371/journal.pgen.1002448 PDF 2011 Belkhadir, Y, Y Jallais, E Balsemão-Pires,
P Epple, JL Dangl* and J Chory* (2011) Brassinosteroids modulate the efficiency of plant immune responses to
microbe-associated molecular patterns. Proc. Natl. Acad.
Sci., USA. doi:
10.1073/pnas.1112840108 PR (*Co-corresponding authors). PDF The
paper above was featured in: Wang, Z (2011) Brassinosteroids modulate plant immunity at multiple
levels. Proc. Natl. Acad. Sci., USA doi/10.1073/pnas.1118600109. PDF Bonardi, V, S Tang, A Stallmann, M Roberts, K Cherkis and
JL Dangl (2011) Expanded functions for a family of plant intracellular immune
receptors beyond specific recognition of pathogen effectors. Proc. Natl.
Acad. Sci., USA. 108, 16463-1646. doi:
10.1073/pnas.1113726108. (note: correction to Fig.2 published online Dec 27,
2016 is included in this pdf) PDF The Arabidopsis Interactome Mapping Consortium (2011) Evidence for Network Evolution in an Arabidopsis Interactome Map.
Science 333, 602-607. doi: 10.1126/science.1203877. PDF Supporting information: http://www.sciencemag.org/content/suppl/2011/07/27/333.6042.601.DC1.html Mukhtar,
MS, A-R Carvunis, M Dreze, P Epple, J Steinbrenner, J Moore, M Tasan, M
Galli, T Hao, MT Nishimura, SJ. Pevzner, SE Donovan, L Ghamsari, B Santhanam,
V Romero, MM Poulin, F Gebreab, BJ Gutierrez, S Tam, D Monachello, M Boxem, CJ. Harbort, N McDonald, L Gai, H Chen, Y He, EU Effectoromics
Consortium, J
Vandenhaute, FP Roth, DE Hill, JR Ecker, M
Vidal*, J Beynon*, P Braun* and JL Dangl* (2011) Independently evolved
virulence effectors converge onto hubs in a plant immune system network. Science 333, 596-601. doi: 10.1126/science.1203659. (*Co-corresponding authors). PDF
Supporting information: http://www.sciencemag.org/content/suppl/2011/07/27/333.6042.596.DC1.html The two
papers above were featured in: Landry, CR (2011) A
Cellular Roadmap for the Plant Kingdom. Science 333, 532-533. PDF And at: http://www.unc.edu/spotlight/plant-pathogens Baltrus, DA, MT Nishimura,
A Romanchuk, JH Chang, MS Mukhtar, TF Law, K Cherkis, J Roach, SR Grant, CD
Jones and JL Dangl (2011) Dynamic evolution of pathogenicity revealed by
sequencing and comparative genomics of 19 Pseudomonas
syringae isolates. PLoS Pathogens
7, e1002132. doi:
10.1371/journal.ppat.1002132. PDF Supporting information: http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1002132#s5 Gao,
Z, E-H Chung, T K Eitas, J L Dangl (2011) The plant intracellular innate
immune receptor RPM1 is activated at, and functions on, the plasma membrane. Proc.
Natl. Acad. Sci., USA 108, 7619-7624. doi:10.1073/pnas.1104410108. PDF van
Doorn, WG, EP Beers, JL Dangl, VE Franklin-Tong, P Gallois, I Hara-Nishimura,
AM Jones, M Kawai-Yamada, E Lam JW Mundy, L Mur, M Petersen, A Smertenko, M
Taliansky, F van Breusegem, T Wolpert, E Woltering, B Zhivotovsky, PV.
Bozhkov (2011) Morphological classification of plant cell deaths. Cell Death &
Different. doi:10.1038/cdd.2011.36. PDF Coll,
NS, P Epple and JL Dangl (2011) Programmed cell death in the plant immune
system. Cell Death & Different. doi:10.1038/cdd.2011.37. PDF Jallais,
Y, Y Belkhadir, E Balsemão-Pires, JL Dangl and J Chory (2011) BAK1 is recruited to activated cell surface
receptors through its extracellular leucine-rich-repeat domain. Proc.
Natl. Acad. Sci., USA 108, 8503-8507. doi:10.1073/pnas.1103556108. PDF The
paper above was featured in: Li, J. (2011) Direct involvement of leucine-rich repeats in assembling
ligand-triggered receptor–coreceptor complexes Proc.
Natl. Acad. Sci., USA 108, 8073-8074. PDF Chung,
EH, L da Cunha, A-J Wu, Z Gao, K Cherkis, AJ Afzal, D Mackey and JL Dangl
(2011) Specific threonine phosphorylation of a host target by two
unrelated type III effectors activates a host innate immune receptor in
plants. Cell Host & Microbe 9, 125-136.
doi:10.1016/j.chom.2011.01.009. PDF The
paper above was featured in: Innes, R.W. (2011). Activation of
Plant Nod-like Receptors: How Indirect Can It Be? Cell Host Microbe 9,
87-89. PDF 2010 Coll, NS, D
Vercammen, A Smidler, C Clover, F van Breusegem, JL Dangl* and P Epple* (2010) Arabidopsis type I metacaspases
control cell death. Science 330,
1393-1397. doi: 10.1126/science.1194980. (*Co-corresponding authors) PDF Mole, B, S Habibi,
JL Dangl and SR Grant (2010) Gluconate metabolism is required for virulence
of the soft-rot pathogen Pectobacterium
carotovorum. Molec. Plant-Microbe Interact. 23, 1335–1344. doi:10.1094/MPMI-03-10-0067. PDF Eitas, TK and JL Dangl (2010) NB-LRR
proteins: Pairs, pieces, perception, partners and pathways. Curr. Opinion in Plant Biology.
10.1016/j.pbi.2010.04.007. PDF Todesco, M, S Balasubramanian, TT Hu, MB Traw, M Horton, P Epple, C.
Kuhns, S Sureshkumar, C Schwartz, C Lanz, RAE Laitinen, Y Huang, J Chory, V
Lipka, JO Borevitz, JL Dangl, J Bergelson, M Nordborg, and D Weigel (2010) Natural allelic
variation underlying a major fitness tradeoff in Arabidopsis thaliana. Nature, 465, 632-636. doi:10.1038/nature09083. PDF Nishimura, MT and JL Dangl (2010) Arabidopsis
and the Plant Immune System. Plant J. 61, 1053–1066. doi:
10.1111/j.1365-313X.2010.04131.x published online March 10.2010. PDF Serrano, M, DA Hubert, JL Dangl, P
Schulze-Lefert and E Kombrink (2010) A chemical screen for suppressors of the
avrRpm1-
Widjaja,
I, I Lassowskat, G Bethke, L Eschen-Lippold, H-H Long, K Naumann, JL Dangl, D
Scheel and J Lee (2009) A Protein Phosphatase 2C, specifically responsive to
the bacterial effector AvrRpm1 but not to AvrB effector, regulates defense
responses in Arabidopsis. Plant J doi: 10.1111/j.1365-313X.2009.04047.x. PDF
Studholme,
DJ, Selena Gimenez-Ibanez, D MacLean, JL Dangl JH Chang and JP. Rathjen
(2009) A draft genome sequence and functional screen reveals the repertoire
of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528.
BMC Genomics 10, 395 doi:10.1186/1471-2164-10-395. PDF
Miller,
G, R Tam, D Cortes, MA Torres, V Shulaev, JL Dangl and R Mittler (2009) The
plant NADPH oxidase RbohD mediates rapid, systemic signaling in response to
diverse stimuli. Science Signaling 2 (84), ra45, doi:
10.1126/scisignal.2000448. PDF
Hubert,
DA, Y He, P Tornero, BC McNulty and JL Dangl (2009) Specific Arabidopsis
HSP90.2 alleles recapitulate RAR1 co-chaperone function in plant NB-LRR
disease resistance regulation. Proc. Natl. Acad. Sci., USA published online
June 1, 2009, doi:10.1073/pnas.0904877106. PDF
Widjaja,
I, K Naumann, U Roth, N Wolf, D Mackey, JL Dangl, D Scheel and J Lee (2009)
Combining sub-proteome enrichment and Rubisco depletion enables
identification of low abundance proteins differentially regulated during
plant defense. Proteomics 9, 138-147. PDF
Reinhardt,
JA, DA Baltrus, MT Nishimura, WR Jeck, CD Jones and JL Dangl (2009) De novo
assembly using low coverage short read sequence data from the rice pathogen
Pseudomonas syringae pv. oryzae. doi: Genome Res.19, 294-305.
10.1101/gr.083311.108 published online Nov 17, 2008. PDF
2008
Glasner, JD, M
Marquez-Villavincencio, H-S Kim, CE Jahn, B Ma, BS Biehl, AI Rissman, B Mole,
X Yi, C-H Yang, JL Dangl, SR Grant, NT Perna, AO. Charkowski (2008)
Niche-specificity and the variable fraction of the Pectobacterium pan-genome.
Molec. Plant-Microbe Interact. 21, 1549-1560. PDF
Jones, AM, J Chory,
JL. Dangl, M Estelle, SE Jacobsen, EM Meyerowitz, M Nordborg, and D Weigel
(2008). The Impact of Arabidopsis on Human Health Research:
"Diversifying our portfolio". Cell 133, 939-943. PDF
Eitas, T, ZL Nimchuk
and JL Dangl (2008) Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes
to disease resistance induced by the Pseudomonas syringae effector AvrB.
Proc. Natl. Acad. Sci. USA 105, 6475-6480. doi 10.1073 pnas.0802157105. PDF
Goel, AK, D Lundberg,
MA Torres, R Matthews, C Akimoto-Tomiyama, L Farmer, R Vierstra, JL Dangl and
SR Grant (2008) The Pseudomonas syringae type III effector HopAM1 enhances
virulence on water-stressed plants. Molec. Plant-Microbe Interact. 21,
361-370. PDF
Weigel, D and JL
Dangl (2007) 10 years of Current Opinion in Plant Biology 1998-2007. Curr.
Opin. Plant Biology 10, 543-545. (Editorial). PDF Jeck, WR, JA Reinhardt,
DA Baltrus, MT Hickenbotham, V Magrini, ER Mardis, JL Dangl, and CD Jones
(2007) Extending assembly of short DNA sequences to handle error.
Bioinformatics, published online September 24, 2007;
doi:10.1093/bioinformatics/btm451. PDF Bomblies,
K, J Lempe, P Epple, N Warthmann, C Lanz, JL Dangl and D Weigel (2007) Autoimmune response as a mechanism for a
Bateson-Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biology
5, e236.
doi:10.1371/journal.pbio.0050236. PDF (Supplemental Figues for
Bomblies et al. PDF The
paper above was featured in: Gross, L (2007) Autoimmunity: A Barrier to Gene Flow in Plants? PLoS Biology 5, doi:10.1371/journal.pbio.0050262. PDF Kattsnelson,
A. (2008) Speciation's roots? The Scientist 22, 19-21. PDF Mole, BM, DA Baltrus, JL Dangl and SR Grant
(2007) Global virulence regulation networks in phytopathogenic bacteria. Trends Microbiol. doi:
10.1016/j.tim.2007.06.005 PDF Desveaux, D AU
Singer, A-J Wu, BC McNulty, L Musslewhite, Z Nimchuk, J Sondek and JL Dangl
(2007) Type III effector activation via nucleotide binding, phosphorylation
and host target interaction. PLoS Pathogens 3, e48. doi:
10.1371/journal.ppat.0030048.
Nimchuk, ZL, EJ
Fisher, D Desveaux, JH Chang and JL Dangl (2007) The AvrPphE (HopX) family of
Pseudomonas syringae type III effectors contain a catalytic triad and a novel
N-terminal domain necessary for function. Molec. Plant-Microbe Interact. 20,
346-357. Published online as doi: 10.1094/MPMI -20-4-0346. PDF
Eulgem, T, X-J Wang,
T Tsuchiya, B Easley, M Tör, T Zhu, JM McDowell, EB Holub and JL Dangl (2007)
EDM2 is a novel component of RPP7-dependent disease resistance in Arabidopsis
that affects RPP7 transcript levels. Plant J. 49, 829-839. Published article online:
Fahlgren, N, MD
Howell, KD Kasschau, EJ Chapman, CM Sullivan, JS Cumbie, SA Givan, TF Law, SR
Grant, JL Dangl and JC Carrington (2007) High-throughput sequencing of
Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.
PLoS ONE 2, e219. doi:10.1371/journal.pone.0000219. PDF
Knoth, C., J.
Ringler, JL Dangl and T Eulgem (2007) Arabidopsis WRKY70 is required for full
RPP4-mediated disease resistance and basal defense against Hyaloperonospora
parasitica. Molec. Plant-Microbe Interact 20, 120-128. PDF
Jones, JDG and JL Dangl (2006) The Plant Immune System. Nature 444,
323-329.DOI: 10.1038/nature05286. PDF
Kaminaka, H, C Näke, P Epple, J Dittgen, K
Schütze, C Chaban, BF Holt III, T Merkle,
Grant, SR, EJ Fisher, JH Chang, BM Mole and
JL Dangl (2006) Subterfuge and manipulation: Type III effector proteins of
phytopathogenic bacteria. Annu. Rev. Microbial. 60, 425-429. Published online
Andersson, MX, O Kourtchenko, JL Dangl, D
Mackey, and M Ellerström (2006) Phospholipid signalling during the AvrRpm1
and AvrRpt2-induced disease resistance response in Arabidopsis thaliana: The
sequential activation of phospholipases C and D. Plant J., 47, 947-959. PDF
Desveaux, D, AU
Singer and JL Dangl (2006) Type III effector proteins: Doppelgangers of
bacterial virulence. Curr. Opin. Plant
Biology 9, 376-382. Published
online
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McDowell, JM, SG Williams, NT Funderburg, T
Eulgem and JL Dangl (2005) Genetic analysis of developmentally regulated
resistance to Downy Mildew (Hyaloperonospora parasitica) in Arabidopsis
thaliana. Molec. Plant-Microbe Interact. 18, 1226-1234. PDF
Torres, MA, JDG Jones and JL Dangl (2005) The
pathogen-induced, Atrboh-dependent, oxidative burst suppresses cell death
spread in Arabidopsis. Nature Genet. 37, 1130-1134. Published online
September 18, 2005; doi: 10.1038/ng1639. PDF
Kawasaki, T, J Nam, DC Boyes, BF Holt, III,
DA Hubert, A Wiig and JL Dangl (2005) A duplicated pair of Arabidopsis
RING-finger E3 ligases contribute to RPM1-and RPS2-mediated hypersensitive
response. Plant J. 44, 258-270. Published online
Holt III, BF, Y
Belkhadir and JL Dangl (2005) Antagonistic control
of disease resistance protein stability in the plant immune system. Science 309, 929-932. published online 23
June 2005 DOI: 10.1126/science.1109977. Abstract | PDF Torres, MA and JL
Dangl (2005) Functions of the respiratory burst oxidase in biotic
interactions, abiotic stress and development. Curr. Opin. Plant Biology 8,
1-7.Abstract
| PDF Kim, M.-G, L da-Cunha, A McFall, Y Belkhadir,
JL Dangl and D Mackey (2005) Two Pseudomonas syringae type III
effectors inhibit RIN4-regulated basal defense in Arabidopsis. Cell
121, 749-759.Abstract
| PDF Kim,
H-S, D Desveaux, AU Singer, P Patel, J Sondek and JL Dangl (2005) The P.
syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4,
from Arabidopsis membranes to block RPM1 activation. Proc. Natl. Acad.
Sci. USA 102, 6496-6501.Abstract | PDF Lindeberg,
M, J Stavrinides, JH Chang, JR Alfano, A Collmer, JL Dangl, JT Greenberg, JW
Mansfield and DS Guttman. Proposed guidelines for a unified nomenclature and
phylogenetic analysis of type III Hop effector protein in the plant pathogen Pseudomonas
syringae. Molec. Plant-Microbe Interact. 18, 275-282. Abstract | PDF Chang,
JH, JM Urbach, TF Law, LW Arnold, A Hu, S Gombar, SR Grant, FM Ausubel and JL
Dangl. A high-throughput, near-saturating screen for type III effector genes
from Pseudomonas syringae. Proc. Natl. Acad. Sci., USA 102,
2549-2554. Abstract
| PDF The paper above was featured in: Nimura,
K and SY He. Powerful screens for bacterial virulence proteins. Proc.
Natl. Acad. Sci., |
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Mims,
CW, EA Richardson, BF Holt III and JL Dangl. Ultrastructure of the
host-pathogen interface in Arabidopsis thaliana leaves infected by the
downy mildew Hyaloperonospora parasitica. Can. J. Bot. 82,
1001-1008. Abstract
| PDF Belkhadir,
Y, Z Nimchuk, DA Hubert, D Mackey and JL Dangl. Arabidopsis RIN4 negatively
regulates disease resistance mediated by RPS2 and RPM1 downstream or
independent of the NDR1 signal modulator, and is not required for the
virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. Plant
Cell 16, 2822-2835.Abstract | PDF Singer,
AU, D Desveaux, L Betts, JH Chang, Z Nimchuk, SR Grant, JL Dangl and J
Sondek. Crystal structures of the type III effector protein AvrPphF and its
chaperone reveal residues required for plant pathogenesis. Structure
12, 1669-1681. (cover) Abstract | PDF Rohmer,
L, DS Guttman and JL Dangl. Diverse evolutionary mechanisms shape the type
III effector virulence factor repertoire in plant pathogenic Pseudomonas
syringae. Genetics 167, 1341-1360. Abstract
| PDF Tiege,
M, E Scheikl, T. Eulgem, R. Doczi, K Ichimura, K Shinozaki, JL Dangl and H
Hirt. The MKK2 pathway mediates cold and salt stress signaling in
Arabidopsis. Molec. Cell 15, 141-152. Abstract |
PDF Belkhadir,
Y, R Subramanian and JL Dangl. Plant disease resistance protein signaling:
NBS-LRR proteins and their partners. Curr. Opin. Plant Biology 7,
391-399. Abstract
| PDF Eulgem,
T, VJ Weigman, H-S. Chang, JM McDowell, EB Holub, J Glazebrook, T Zhu and JL
Dangl. Gene expression signatures from three genetically separable resistance
gene signaling pathways for downy mildew resistance. Plant Physiol.
135, 1129-1144. Abstract
| PDF Chang,
JH, AK Goel, SR Grant and JL Dangl. Wake of the flood: ascribing functions to
the wave of type III effector proteins of phytopathogenic bacteria. Curr.
Opin. Microbiol. 7, 11-18. Abstract |
PDF Desveaux,
D, G Subramanian, C Després, J-N Mess, C Lévesque, PR Fobert, JL Dangl, and N
Brisson. A Whirly plant transcription factor is a component of the
SA-signaling pathway and is required for maximal disease resistance. Developmental
Cell 6, 229-240. Abstract | PDF |
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Nimchuk,
Z., T Eulgem, BF Holt III and JL Dangl Recognition and response in the plant
immune system. Annu. Rev. Genet. 37, 579-609. Abstract
| PDF Hubert,
DA, P Tornero, Y Belkhadir, P Krishna, A Takahashi, K Shirasu and JL Dangl.
Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease
resistance protein. EMBO J 22, 5679-5689. Abstract | PDF The paper above was featured in:
Kwak,
JM, IC Mori, Z-M Pei, N Leonhardt, MA Torres, JL Dangl, RE Bloom, S Boddie,
JDG Jones and JI Schroeder. NADPH oxidase AtrbohD and AtrbohF function in
ROS-dependent ABA signaling in Arabidopsis. EMBO J. 22, 2623-2633. Abstract | PDF Dangl,
JL. Molecular call-and-response how Salmonella learns the Gospel from its
host. Trends in Microbiol. 11, 245-246.Abstract
| PDF Rohmer,
L., S Kjemtrup, P Marchesini and JL Dangl. Nucleotide sequence, functional
characterization and evolution of pFKN, a virulence plasmid in Pseudomonas
syringae pathovar maculicola. Molec. Microbiol. 47,
1545-1562. Abstract
| PDF Epple,
P, AA Mack, VRF Morris and JL Dangl. Antagonistic control of oxidative
stress-induced cell death in Arabidopsis by two related, plant specific zinc
finger proteins. Proc. Natl. Acad. Sci., USA 100, 6831-6836. Abstract | PDF Holt
III, BF, DA Hubert and JL Dangl. Resistance gene signaling in plants-complex
similarities to animal innate immunity. Curr. Opin. Immunol. 15,
20-25. Abstract
| PDF Mackey,
D., Belkhadir,Y., Alonso, JM., Ecker, JR. and JL Dangl. Arabidopsis RIN4 is a
target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated
resistance. Cell 112, 379-389. Abstract
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Varet,
A, JE Parker, P Tornero, N Nass, T Nürnberger, JL Dangl, D Scheel and J Lee
(2002) NHL25 and NHL3, two NDR1/HIN1-like genes in Arabidopsis
thaliana with potential role(s) in plant defense. Molec. Plant-Microbe
Interact. 15, 608-616. Abstract | PDF Holt
III, BF, DC Boyes, M. Ellerstrøm, Tör,
M, P Gordon, A Cuzick, T Eulgem, Tornero,
P, P Merritt, A Sadanandom, K Shirasu, R Innes and JL Dangl (2002) RAR1 and
NDR1 contribute quantitatively to the function of Arabidopsis disease
resistance genes in both simple and non-linear pathways. Plant Cell 14,
1005-1015. Abstract | PDF The two papers above were featured in:
Maleck,
K, U Neuenschwander, R Cade, RA Dietrich, JL Dangl and J Ryals (2002)
Isolation and characterization of broad spectrum disease resistant mutants. Genetics
160, 1661-1771. Abstract | PDF Chen,
W, NJ Provart, J Glazebrook, F Katagiri, H.-S. Chang, T Eulgem, F Mauch, S
Luan, G Zou, SA Whitham, PR Budworth, Y Tao, Z Xie, X Chen, S Lam, JA Kreps,
JF Harper, A Si-Ammour, B Mauch-Mani, M Heinlein, K Kobayashi, T Hohn, JL
Dangl, X Wang, T Zhu (2002) Expression profile matrix of Arabidopsis
transcription factor genes suggests their putative functions in response to
environmental stresses. Plant Cell 14, 559-574. Abstract
| PDF Mackey,
D, BF Holt III, A Wiig and JL Dangl (2002) RIN4 interacts with Pseudomonas
syringae Type III effector molecules and is required for RPM1-mediated
disease resistance in Arabidopsis. Cell 108, 743-754. Abstract
| PDF The paper above was featured in:
Aviv,
DH, C Rustérucci, BF Holt III, RA Dietrich, JE Parker and JL Dangl (2002)
Runaway cell death, but not basal disease resistance, in lsd1 is SA-
and NIM1/NPR1-dependent. Plant J. 23, 381-391. (cover) Abstract
| PDF The paper above was featured in:
Tornero,
P, R Chao,
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Tornero,
P and JL Dangl (2001) A high throughput method for quantifying growth of
phytopathogenic bacteria in Arabidopsis thaliana. Plant J. 28,
475-481. Abstract | PDF Rustérucci,
C, DH Aviv, BF Holt III, JL Dangl and JE Parker (2001) The disease resistance
signaling components EDS1 and PAD4 are essential regulators of
the cell death pathway controlled by LSD1 in Arabidopsis. Plant
Cell 13, 2211-2224. Abstract | PDF The paper above was featured in:
Staskawicz,
BJ, MB Mudgett, JL Dangl and JE Galan (2001) Common and contrasting
mechanisms of pathogen virulence and host resistance in plant and animal
disease. Science 292, 2285-2289. Abstract
| PDF Dangl,
JL and JDG Jones (2001) Plant pathogens and integrated defence responses to
infection. Nature 411, 826-833. Abstract
| PDF Nimchuk,
Z, L Rohmer, JH Chang and JL Dangl (2001) Knowing the Dancer from the Dance: R
gene products and their interactions with other proteins from host and
pathogen. Curr. Opin. Plant Biol 4, 288-294. Abstract
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Somerville,
C and JL Dangl (2000) Genomics: Plant biology in 2010 (Policy forum). Science
290, 2077-2078.Abstract | PDF The
Arabidopsis Genome Inititative (2000) Analysis of the genome of the flowering
plant Arabidopsis thaliana. Nature 408, 796-815. Abstract | PDF Maleck,
K, A Levine, T Eulgem, A Morgan, J Schmid, K Lawton, JL Dangl and RA Dietrich
(2000) The transcriptome of Arabidopsis during systemic acquired resistance. Nature
Genet. 26, 403-410. Abstract
| PDF Dangl,
JL, RA Dietrich and H Thomas (2000) Senescence and Programmed Cell Death. In:
Biochemistry and Molecular Biology of Plants (eds.) B. Buchanan, Schrick,
K, U Mayer, A Horrichs, C Kuhnt, C Bellini, J Dangl, J Schmidt and G Jürgens
(2000) Cell expansion in Arabidopsis embryogenesis requires FACKEL (FK), a
sterol C-14 reductase. Genes & Develop. 14, 1471-1484. Abstract | PDF Nimchuk,
Z, McDowell,
JM, A Cuzick, C Can, J Beynon, JL Dangl and EB Holub (2000) Downy mildew (Peronospora
parasitica) resistance genes in Arabidopsis vary in functional
requirements for NDR1, EDS1, NPR1 and Salicylic Acid accumulation. Plant
J. 22,523-530. Abstract | PDF Kjemtrup,
S., Z. Nimchuk and JL Dangl (2000) Effector proteins of phytopathogenic
bacteria: Bifunctional signals in virulence and host recognition. Curr.
Opin. Microbiol. 3, 73-78. Abstract | PDF Holt
III, BF, D Mackey and JL Dangl (2000) Strength through diversity: Role of
leucine rich repeats in disease resistance of plants. Curr. Biol. 100,
R5-R7.Abstract
| PDF McDowell,
JM and JL Dangl (2000) Signal transduction in the plant immune response. Trends
Biochem. Sci. 25, 79-82. Abstract
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Kliebenstein,
DJ, RA Dietrich, AC Martin, RL Last and JL Dangl (1999) LSD1 regulates
salicylic acid induction of copper zinc superoxide dismutase in Arabidopsis
thaliana. Molec. Plant-Microbe Interact. 12, 1022-1026. Abstract
| PDF Dangl,
JL (1999) A long view from a high plateau. Nature 401, 543-544. Abstract | PDF Morel,
J-B and JL Dangl (1999) Suppressors of the Arabidopsis lsd5 cell death
mutation identify genes involved in regulating disease resistance responses. Genetics
151, 305-319. Abstract | PDF Boyes,
DC, J Nam and JL Dangl (1998) The Arabidopsis thaliana RPM1 disease
resistance gene product is a peripheral plasma membrane protein that is
degraded coincident with the hypersensitive response. Proc. Natl. Acad.
Sci., USA 95, 15849-15854. Abstract | PDF Grant,
MR, JM McDowell, AG Sharpe, M de Torres Zabala, DJ Lydiate and JL Dangl
(1998) Independent deletions of a pathogen resistance gene in Brassica and
Arabidopsis. Proc. Natl. Acad. Sci., USA 95, 15843-15848. Abstract | PDF Richberg,
MH, DH Aviv and JL Dangl (1998) Dead cells DO tell tales. Curr. Opin.
Plant Biol. 1, 480-485.Abstract
| PDF McDowell,
JM, D Murali, TA Long, MGM Aarts, S Goff, EB Holub and JL Dangl (1998)
Intragenic recombination and diversifying selection contribute to the
evolution of downy mildew resistance at the RPP8 locus in Arabidopsis.
Plant Cell 10, 1861-1874. Abstract
| PDF Morel,
J-B and JL Dangl (1997) The Hypersensitive response and the induction of cell
death in plants. Cell Death & Different.19, 17-24. Abstract
| PDF Hunt,
MD, TP Delaney, RA Dietrich, KB Weymann, JL Dangl and JA Ryals (1997)
Salicylate-independent lesion formation in Arabidopsis lsd mutants. Mol.
Plant-Microbe Interact. 10, 531-536. Abstract | PDF Dietrich,
RA, MH Richberg, R Schmidt, C Dean and JL Dangl (1997) A novel zinc finger
protein is encoded by the Arabidopsis LSD1 gene and functions as a
negative regulator of plant cell death. Cell 88, 685-694. Abstract
| PDF Dangl,
JL, RA Dietrich and MH Richberg (1996) Death don't have no mercy: Cell death
programs in plant-microbe interactions. Plant Cell 8, 1793-1807. Abstract
| PDF Jabs,
T, RA Dietrich and JL Dangl (1996) Initiation of runaway cell death in an
Arabidopsis mutant by extracellular superoxide. Science 273,
1853-1856. Abstract
| PDF
Jones,
AM, and JL Dangl (1996) Logjam at the Ritter,
C and JL Dangl (1996) Interference between two specific pathogen recognition
events mediated by distinct plant disease resistance genes. Plant Cell
8, 251-257. Abstract | PDF
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