Future features

• Manual adjustment of alignments
• More plugins for sequence analysis
  
• Markup output of alignments (e.g. rich text format or equivalent)
  
• Ideas/Requests? jcpearso<at>email.unc.edu (I'm sure SPAMbots have figured out this trick already)

Bug Fixes

• SVG output of the Sequence Alignment View sometimes mismatches the text output and the motif outlines. I think this is a problem with different definitions of fonts between programs (Java vs. Batik), oddly enough. To fix, just select the layer with all of the motif outlines, and stretch it out.